.. _methods:

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Uncertainty Quantification Methods
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.. toctree::
   :maxdepth: 1
   :caption: Meta-Pages:

   meta/MetaHomePage
   meta/MetaToolkitTutorial
   meta/MetaNotation
   meta/MetaComments
   meta/MetaToolkitStructure
   meta/MetaToolkitPageList
   meta/MetaCopyrightNotice
   meta/MetaSoftwareDisclaimer

.. toctree::
   :maxdepth: 1
   :caption: Core Threads:

   thread/ThreadCoreGP
   thread/ThreadCoreBL
   thread/ThreadGenericEmulateDerivatives
   thread/ThreadGenericHistoryMatching
   thread/ThreadGenericMultipleEmulators
   thread/ThreadTopicExperimentalDesign
   thread/ThreadTopicScreening
   thread/ThreadTopicSensitivityAnalysis
   thread/ThreadVariantDynamic
   thread/ThreadVariantModelDiscrepancy
   thread/ThreadVariantMultipleOutputs
   thread/ThreadVariantTwoLevelEmulation
   thread/ThreadVariantWithDerivatives

.. toctree::
   :maxdepth: 1
   :caption: Procedures:

   proc/ProcASCM
   proc/ProcApproxDeltaPosterior
   proc/ProcApproximateIterateSingleStepEmulator
   proc/ProcApproximateUpdateDynamicMeanandVariance
   proc/ProcAutomaticRelevanceDetermination
   proc/ProcBLAdjust
   proc/ProcBLPredict
   proc/ProcBLVarianceLearning
   proc/ProcBranchAndBoundAlgorithm
   proc/ProcBuildCoreBL
   proc/ProcBuildCoreBLEmpirical
   proc/ProcBuildCoreGP
   proc/ProcBuildEmulateDerivsGP
   proc/ProcBuildMultiOutputGP
   proc/ProcBuildMultiOutputGPSep
   proc/ProcBuildWithDerivsGP
   proc/ProcDataPreProcessing
   proc/ProcExactIterateSingleStepEmulator
   proc/ProcExchangeAlgorithm
   proc/ProcExploreFullSimulatorDesignRegion
   proc/ProcFourierExpansionForKL
   proc/ProcHaarWaveletExpansionForKL
   proc/ProcHaltonDesign
   proc/ProcLHC
   proc/ProcLatticeDesign
   proc/ProcMCMCDeltaCoreGP
   proc/ProcMorris
   proc/ProcOptimalLHC
   proc/ProcOutputSample
   proc/ProcOutputTransformation
   proc/ProcOutputsPrincipalComponents
   proc/ProcPivotedCholesky
   proc/ProcPredictGP
   proc/ProcPredictMultiOutputFunction
   proc/ProcPredictMultipleEmulators
   proc/ProcSimulationBasedInference
   proc/ProcSobolSequence
   proc/ProcUABL
   proc/ProcUADynamicEmulator
   proc/ProcUAGP
   proc/ProcUAMultipleEmulators
   proc/ProcUpdateDynamicMeanAndVariance
   proc/ProcValidateCoreGP
   proc/ProcVarSAGP
   proc/ProcVariogram
   proc/ProcWeylDesign

.. toctree::
   :maxdepth: 1
   :caption: Examples:

   exam/Exam1DHistoryMatch
   exam/ExamCoreGP1Dim
   exam/ExamCoreGP2Dim
   exam/ExamDecisionBasedSA
   exam/ExamMultipleOutputs
   exam/ExamMultipleOutputsPCA
   exam/ExamScreeningAutomaticRelevanceDetermination
   exam/ExamScreeningMorris
   exam/ExamVariantWithDerivatives1Dim

.. toctree::
   :maxdepth: 1
   :caption: Further Discussion:

   disc/DiscActiveInputs
   disc/DiscAdjustExchBeliefs
   disc/DiscBayesLinearTheory
   disc/DiscBestInput
   disc/DiscBuildCoreGP
   disc/DiscCore
   disc/DiscCoreDesign
   disc/DiscCoreValidationDesign
   disc/DiscCovarianceFunction
   disc/DiscDecisionBasedSA
   disc/DiscExchangeableModels
   disc/DiscExpertAssessMD
   disc/DiscFactorialDesign
   disc/DiscFormalAssessMD
   disc/DiscGPBasedEmulator
   disc/DiscGaussianAssumption
   disc/DiscImplausibilityCutoff
   disc/DiscInformalAssessMD
   disc/DiscIterativeRefocussing
   disc/DiscKarhunenLoeveExpansion
   disc/DiscMonteCarlo
   disc/DiscObservations
   disc/DiscPostModeDelta
   disc/DiscRealisationDesign
   disc/DiscReification
   disc/DiscReificationTheory
   disc/DiscSensitivityAndDecision
   disc/DiscSensitivityAndOutputUncertainty
   disc/DiscSensitivityAndSimplification
   disc/DiscSobol
   disc/DiscStructuredMD
   disc/DiscStructuredMeanFunction
   disc/DiscToolkitSensitivityAnalysis
   disc/DiscUANugget
   disc/DiscUncertaintyAnalysis
   disc/DiscVarianceBasedSA
   disc/DiscVarianceBasedSATheory
   disc/DiscWhyModelDiscrepancy
   disc/DiscWhyProbabilisticSA

.. toctree::
   :maxdepth: 1
   :caption: Alternatives:

   alt/AltBLPriors
   alt/AltBasisFunctions
   alt/AltCoreDesign
   alt/AltCorrelationFunction
   alt/AltDynamicEmulationApproach
   alt/AltEstimateDelta
   alt/AltGPPriors
   alt/AltGPorBLEmulator
   alt/AltImplausibilityMeasure
   alt/AltIteratingSingleStepEmulators
   alt/AltMeanFunction
   alt/AltMeanFunctionMultivariate
   alt/AltMultipleOutputsApproach
   alt/AltMultivariateCovarianceStructures
   alt/AltMultivariateGPPriors
   alt/AltNumericalSolutionForKarhunenLoeveExpansion
   alt/AltOptimalCriteria
   alt/AltOptimalDesignAlgorithms
   alt/AltScreeningChoice

.. toctree::
   :maxdepth: 1
   :caption: Definitions:

   def/DefActiveInput
   def/DefAdjoint
   def/DefAssessment
   def/DefBLAdjust
   def/DefBLVarianceLearning
   def/DefBasisFunctions
   def/DefBayesLinear
   def/DefBayesian
   def/DefBestInput
   def/DefCalibration
   def/DefCodeUncertainty
   def/DefConjugate
   def/DefCorrelationLength
   def/DefDataAssimilation
   def/DefDecisionBasedSA
   def/DefDesign
   def/DefDeterministic
   def/DefDynamic
   def/DefElicitation
   def/DefEmulator
   def/DefExchangeability
   def/DefForcingInput
   def/DefGP
   def/DefHistoryMatching
   def/DefHyperparameter
   def/DefImplausibilityMeasure
   def/DefInactiveInput
   def/DefMUCM
   def/DefModelBasedDesign
   def/DefModelDiscrepancy
   def/DefMultilevelEmulation
   def/DefMultivariateGP
   def/DefMultivariateTProcess
   def/DefNugget
   def/DefPrincipalComponentAnalysis
   def/DefProper
   def/DefRegularity
   def/DefReification
   def/DefScreening
   def/DefSecondOrderExch
   def/DefSecondOrderSpec
   def/DefSensitivityAnalysis
   def/DefSeparable
   def/DefSimulator
   def/DefSingleStepFunction
   def/DefSmoothingKernel
   def/DefSmoothness
   def/DefSpaceFillingDesign
   def/DefStateVector
   def/DefStochastic
   def/DefTProcess
   def/DefTrainingSample
   def/DefUncertaintyAnalysis
   def/DefValidation
   def/DefVarianceBasedSA
   def/DefWeakPrior